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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108642436_108642762_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108642436 - 108642762
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTACTAGA
5'SS Class:
major
3'SS Sequence:
TCTGTGTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCTTTTATT
Flanking Amino Acid:
LIGRVVSLQKGSAHVKVHNL
Intron Amino Acid Position:
770

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.3
70.1
42
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.1
0.56
1
72.6
42.4
Minor 5ss
37
-1.5
2.5
44
43
Minor BPS
69.5
0.7
1.5
84.38
36.3

Associated Gene:

Gene:
GART
Ensembl Gene ID:
ENSAPLG00000008933
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009464
108635753 - 108668276
32524
ENSAPLT00000032784
108634516 - 108671122
36607
ENSAPLT00000032437
108635121 - 108671122
36002
ENSAPLT00000031100
108634516 - 108665279
30764
ENSAPLT00000040230
108616623 - 108664316
47694
ENSAPLT00000022302
108634474 - 108671122
36649
ENSAPLT00000039337
108634516 - 108667017
32502