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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108648005_108648598_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108648005 - 108648598
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGA
5'SS Class:
major
3'SS Sequence:
CTGTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAACAAA
U12 Branch Point Sequence:
TGTAAGCTAACA
Flanking Amino Acid:
GTDGVGTKLKIAQVCKKHDT
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
49.3
-0
1.3
57.4
35.7
Major PPT
81.9
0.72
0.9
76.3
37.7
Minor 5ss
36.2
-1.6
3.2
47.7
47.7
Minor BPS
44.2
-0.4
2.4
63.11
42.3

Associated Gene:

Gene:
GART
Ensembl Gene ID:
ENSAPLG00000008933
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031100
108634516 - 108665279
30764
ENSAPLT00000040230
108616623 - 108664316
47694
ENSAPLT00000022302
108634474 - 108671122
36649
ENSAPLT00000039337
108634516 - 108667017
32502
ENSAPLT00000009464
108635753 - 108668276
32524
ENSAPLT00000032784
108634516 - 108671122
36607
ENSAPLT00000032437
108635121 - 108671122
36002