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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108653284_108653644_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108653284 - 108653644
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGCGTA
5'SS Class:
major
3'SS Sequence:
ATTTTTATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATTTTTATTC
Flanking Amino Acid:
GMRKEGVPYFGVLYAGLMLT
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
66.8
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.3
0.73
0.8
75.2
39
Minor 5ss
46.1
-0.4
3.2
60.6
46.3
Minor BPS
57
0.2
1.5
64.67
35.3

Associated Gene:

Gene:
GART
Ensembl Gene ID:
ENSAPLG00000008933
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009464
108635753 - 108668276
32524
ENSAPLT00000032784
108634516 - 108671122
36607
ENSAPLT00000032437
108635121 - 108671122
36002
ENSAPLT00000031100
108634516 - 108665279
30764
ENSAPLT00000040230
108616623 - 108664316
47694
ENSAPLT00000022302
108634474 - 108671122
36649
ENSAPLT00000039337
108634516 - 108667017
32502