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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108658127_108658818_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108658127 - 108658818
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTATCTTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGGAT
U12 Branch Point Sequence:
CTATCTTTAAAG
Flanking Amino Acid:
DPKAACSFINSANFPALVVK
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72
39.3
Major BPS
71.4
0.53
1.4
71.4
45.1
Major PPT
74.2
0.55
1
74.5
34.1
Minor 5ss
33.7
-1.9
3.5
47
48.3
Minor BPS
65.6
0.35
1.5
65.31
42.5

Associated Gene:

Gene:
GART
Ensembl Gene ID:
ENSAPLG00000008933
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009464
108635753 - 108668276
32524
ENSAPLT00000032784
108634516 - 108671122
36607
ENSAPLT00000032437
108635121 - 108671122
36002
ENSAPLT00000031100
108634516 - 108665279
30764
ENSAPLT00000040230
108616623 - 108664316
47694
ENSAPLT00000022302
108634474 - 108671122
36649
ENSAPLT00000039337
108634516 - 108667017
32502