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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108658994_108659909_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108658994 - 108659909
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GTGTTGTTATTT
Flanking Amino Acid:
VVGPEVPLAAGIVDDLTAAQ
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
87.3
0.84
0.8
85.4
34.1
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
47.5
-0.1
2.2
67.58
44

Associated Gene:

Gene:
GART
Ensembl Gene ID:
ENSAPLG00000008933
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032784
108634516 - 108671122
36607
ENSAPLT00000031100
108634516 - 108665279
30764
ENSAPLT00000022302
108634474 - 108671122
36649
ENSAPLT00000040230
108616623 - 108664316
47694
ENSAPLT00000009464
108635753 - 108668276
32524
ENSAPLT00000039337
108634516 - 108667017
32502