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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108664317_108668050_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
108664317 - 108668050
Intron Length:
3734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGGAC
5'SS Class:
major
3'SS Sequence:
TGGTTTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTGCTTGTGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
62
36.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.3
0.61
1
72.9
42.2
Minor 5ss
29.7
-2.3
3.5
37.6
41.8
Minor BPS
39.2
-0.7
3.7
71.53
45.7

Associated Gene:

Gene:
GART
Ensembl Gene ID:
ENSAPLG00000008933
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009464
108635753 - 108668276
32524