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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108664317_108670588_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108664317 - 108670588
Intron Length:
6272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
TGGTTTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTGCTTGTGT
Flanking Amino Acid:
KDQRKPVVKHQLMADRVLVI
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
67.8
32.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.3
0.61
1
72.9
42.2
Minor 5ss
28.7
-2.4
3.1
36.5
41.7
Minor BPS
39.2
-0.7
3.7
71.53
45.7

Associated Gene:

Gene:
GART
Ensembl Gene ID:
ENSAPLG00000008933
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022302
108634474 - 108671122
36649
ENSAPLT00000032784
108634516 - 108671122
36607
ENSAPLT00000032437
108635121 - 108671122
36002