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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108688427_108690181_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108688427 - 108690181
Intron Length:
1755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTTAATT
Flanking Amino Acid:
SRSPKRLTDLDKAQLLEIAK
Intron Amino Acid Position:
1477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
89.2
0.88
0.7
88.9
28.2
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
79
0.99
1
87.87
31.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024411
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040393
108676543 - 108691157
14615