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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10870327_10873015_F

Intron Information:

Intron Rank:
127644
Intron Class:
major
Intron Phase:
Intron Coordinates:
10870327 - 10873015
Intron Length:
2689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GCCACTCTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
79
0.72
1
69
38.9
Major PPT
92.3
0.95
0.6
92.1
18.5
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
46
-0.2
1.6
56.63
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018818
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046492
10870053 - 10875619
5567