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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108710841_108710923_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108710841 - 108710923
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTTATCC
Flanking Amino Acid:
GHYIVMKDLSGKHPVSALME
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.6
0.6
1
80.6
31.6
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
56.8
0.19
1.6
67.21
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008908
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009270
108696642 - 108711081
14440