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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108717786_108718334_R

Intron Information:

Intron Rank:
15
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
108717786 - 108718334
Intron Length:
549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CCAATCAATTCAG|T
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCCTTGGACT
Flanking Amino Acid:
VKKQDAISIKLQKEKHEVQV
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.3
55.7
43.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
63.5
0.3
1
59.3
40.5
Minor 5ss
100
1.68
0.4
100
0
Minor BPS
67.8
0.64
1.4
85.63
34

Associated Gene:

Gene:
DONSON
Ensembl Gene ID:
ENSAPLG00000008688
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022391
108716370 - 108722080
5711
ENSAPLT00000009045
108716642 - 108743611
26970