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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108721041_108721296_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108721041 - 108721296
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAC
U12 Branch Point Sequence:
TGCGTCTTACGC
Flanking Amino Acid:
GPPSAAPFWQFLESAYEDKP
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73
34.7
Major BPS
66
0.4
1.1
57.8
38.6
Major PPT
90.2
0.9
0.6
89
20.3
Minor 5ss
32.1
-2
3.3
43.2
44.2
Minor BPS
45.7
-0.3
2
53.59
44.7

Associated Gene:

Gene:
DONSON
Ensembl Gene ID:
ENSAPLG00000008688
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022391
108716370 - 108722080
5711