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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108721041_108726512_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108721041 - 108726512
Intron Length:
5472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAC
U12 Branch Point Sequence:
TGCGTCTTACGC
Flanking Amino Acid:
HWITTERNLQFLESAYEDKP
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.1
32.6
Major BPS
66
0.4
1.1
57.8
38.6
Major PPT
90.2
0.9
0.6
89
20.3
Minor 5ss
35.2
-1.7
3.3
48.1
47.6
Minor BPS
45.7
-0.3
2
53.59
44.7

Associated Gene:

Gene:
DONSON
Ensembl Gene ID:
ENSAPLG00000008688
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009045
108716642 - 108743611
26970