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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108726635_108727307_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108726635 - 108727307
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
GTTCTCTTATTT
Flanking Amino Acid:
LGVDIVVDAGVKLYSAEDES
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
88
0.85
0.8
80.4
37
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
62.3
0.47
1.6
77.8
38.7

Associated Gene:

Gene:
DONSON
Ensembl Gene ID:
ENSAPLG00000008688
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009045
108716642 - 108743611
26970