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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108727407_108731721_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108727407 - 108731721
Intron Length:
4315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTTGC
5'SS Class:
major
3'SS Sequence:
TTGTTTTGTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACTACAACT
Flanking Amino Acid:
QFLERLRPAVARVIDVSNGK
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
64.1
43.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.9
0.65
0.9
73.5
41.9
Minor 5ss
38.7
-1.3
3.1
43.4
44.3
Minor BPS
57.7
0.32
1.9
82.31
38.6

Associated Gene:

Gene:
DONSON
Ensembl Gene ID:
ENSAPLG00000008688
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009045
108716642 - 108743611
26970