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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10873139_10874085_F

Intron Information:

Intron Rank:
127642
Intron Class:
major
Intron Phase:
Intron Coordinates:
10873139 - 10874085
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCATAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TTTGCCATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
85.7
25.6
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
72.5
0.51
1
67.1
37.9
Minor 5ss
46.8
-0.3
2.7
66.4
45.1
Minor BPS
72
0.69
1.7
84.46
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018818
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042073
10872376 - 10875619
3244
ENSAPLT00000046492
10870053 - 10875619
5567