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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108734808_108738671_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108734808 - 108738671
Intron Length:
3864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TAATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTGCTTGAAAT
Flanking Amino Acid:
SFFQPDDEVVGILPLDSEES
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.2
30.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
86.7
0.83
0.8
85
35
Minor 5ss
43.2
-0.8
2.9
55.3
48.9
Minor BPS
56
0.27
1.7
73.72
43.2

Associated Gene:

Gene:
DONSON
Ensembl Gene ID:
ENSAPLG00000008688
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009045
108716642 - 108743611
26970