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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108738717_108739350_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108738717 - 108739350
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTTTCCTCATAT
Flanking Amino Acid:
GREISGIVLEVGRKVSFFQP
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
77.5
0.62
0.9
71.2
39.3
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
62.7
0.48
1.9
85.97
39.8

Associated Gene:

Gene:
DONSON
Ensembl Gene ID:
ENSAPLG00000008688
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009045
108716642 - 108743611
26970