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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108771197_108775904_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108771197 - 108775904
Intron Length:
4708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGTTTCTTAATT
Flanking Amino Acid:
MAQFPTPFGGNLDIWAITV
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.9
38.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
68.7
0.42
0.9
63.7
37.2
Minor 5ss
35.4
-1.7
3
42
44.5
Minor BPS
84.3
1.15
0.9
92.31
29.9

Associated Gene:

Gene:
ITSN1
Ensembl Gene ID:
ENSAPLG00000007137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021618
108771137 - 108845392
74256
ENSAPLT00000017876
108771137 - 108865481
94345
ENSAPLT00000007524
108771137 - 108865481
94345
ENSAPLT00000028980
108771137 - 108845579
74443