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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108785886_108788241_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108785886 - 108788241
Intron Length:
2356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATTT
Flanking Amino Acid:
PIALPSAPGFATLPKSSSFS
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
74.1
37.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.1
0.88
0.7
84
29.8
Minor 5ss
46.6
-0.3
2.8
62.9
42.7
Minor BPS
71.3
0.75
1.5
85.73
34.6

Associated Gene:

Gene:
ITSN1
Ensembl Gene ID:
ENSAPLG00000007137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028980
108771137 - 108845579
74443
ENSAPLT00000021618
108771137 - 108845392
74256