About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108788336_108789297_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
108788336 - 108789297
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CCTTTTTTAATT
Flanking Amino Acid:
LQKAQSFDVASVPPVAEWAV
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.7
0.74
0.8
75.5
38.4
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
71.6
0.76
1.2
78.3
39.3

Associated Gene:

Gene:
ITSN1
Ensembl Gene ID:
ENSAPLG00000007137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007524
108771137 - 108865481
94345
ENSAPLT00000028980
108771137 - 108845579
74443
ENSAPLT00000026636
108787971 - 108865481
77511
ENSAPLT00000021618
108771137 - 108845392
74256
ENSAPLT00000017876
108771137 - 108865481
94345