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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108801914_108802091_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108801914 - 108802091
Intron Length:
178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAGGTGTA
5'SS Class:
major
3'SS Sequence:
TGTTTAAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTCACAATA
Flanking Amino Acid:
LKQVQQNSLHRDSLLTIKRA
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
67.9
37.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
65.6
0.35
1.1
60.7
43
Minor 5ss
36.7
-1.5
3.6
49.7
42.3
Minor BPS
54.3
0.13
1.8
69.64
36.4

Associated Gene:

Gene:
ITSN1
Ensembl Gene ID:
ENSAPLG00000007137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017876
108771137 - 108865481
94345
ENSAPLT00000007524
108771137 - 108865481
94345
ENSAPLT00000028980
108771137 - 108845579
74443
ENSAPLT00000026636
108787971 - 108865481
77511
ENSAPLT00000021618
108771137 - 108845392
74256