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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108802232_108812073_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108802232 - 108812073
Intron Length:
9842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCCTA
5'SS Class:
major
3'SS Sequence:
CTTTTTTGTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CATATTTTACTT
Flanking Amino Acid:
EIDIFNNQLKELREIHNKQQ
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
68.9
43.8
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
82.2
0.72
0.8
76.9
37.3
Minor 5ss
47
-0.3
2.9
65.2
46
Minor BPS
49.7
0.06
1.6
64.56
40.8

Associated Gene:

Gene:
ITSN1
Ensembl Gene ID:
ENSAPLG00000007137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028980
108771137 - 108845579
74443
ENSAPLT00000021618
108771137 - 108845392
74256
ENSAPLT00000017876
108771137 - 108865481
94345
ENSAPLT00000007524
108771137 - 108865481
94345