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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108815434_108816811_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
108815434 - 108816811
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTTGCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTGTATCT
Flanking Amino Acid:
KGKQEIQEKLKKAPLTISAQ
Intron Amino Acid Position:
643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
72.5
39.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
83.8
0.76
0.8
84.1
30.8
Minor 5ss
53.8
0.13
2.7
70.1
41.4
Minor BPS
54.7
0.23
2.2
82.72
39.3

Associated Gene:

Gene:
ITSN1
Ensembl Gene ID:
ENSAPLG00000007137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021618
108771137 - 108845392
74256