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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108816934_108823414_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108816934 - 108823414
Intron Length:
6481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
AATGCATCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTTCTTAACC
Flanking Amino Acid:
ITIQPGDIVMVDESQTGEPG
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
68.1
0.41
1
59
41.2
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
85.2
1.08
1
86.92
29.7

Associated Gene:

Gene:
ITSN1
Ensembl Gene ID:
ENSAPLG00000007137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007524
108771137 - 108865481
94345
ENSAPLT00000028980
108771137 - 108845579
74443
ENSAPLT00000026636
108787971 - 108865481
77511
ENSAPLT00000017876
108771137 - 108865481
94345