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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108823660_108825025_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
108823660 - 108825025
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTATGTTTG
5'SS Class:
weak_major
3'SS Sequence:
TGCTTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
ATTTGCTTATTT
Flanking Amino Acid:
TANNWADFSSTWPTNTNEKP
Intron Amino Acid Position:
847

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.3
71.4
41.2
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
83.7
0.76
0.8
81.1
35.6
Minor 5ss
54.6
0.16
2.3
65.6
39.3
Minor BPS
61.2
0.43
2
82.08
39.9

Associated Gene:

Gene:
ITSN1
Ensembl Gene ID:
ENSAPLG00000007137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021618
108771137 - 108845392
74256
ENSAPLT00000017876
108771137 - 108865481
94345
ENSAPLT00000007524
108771137 - 108865481
94345
ENSAPLT00000028980
108771137 - 108845579
74443
ENSAPLT00000026636
108787971 - 108865481
77511