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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108825186_108825995_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
108825186 - 108825995
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
AAATTTGCATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTTTCAAAT
Flanking Amino Acid:
GSSPSPVLGQGEKVEGLQAQ
Intron Amino Acid Position:
901

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
58.6
0.19
1
56.9
43.4
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
59.1
0.36
1.6
76.7
40.1

Associated Gene:

Gene:
ITSN1
Ensembl Gene ID:
ENSAPLG00000007137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021618
108771137 - 108845392
74256
ENSAPLT00000017876
108771137 - 108865481
94345
ENSAPLT00000007524
108771137 - 108865481
94345
ENSAPLT00000028980
108771137 - 108845579
74443
ENSAPLT00000026636
108787971 - 108865481
77511