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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108826968_108829207_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108826968 - 108829207
Intron Length:
2240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTCTGTATTT
Flanking Amino Acid:
PAAKATMSGEEYIAMYTYES
Intron Amino Acid Position:
997

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.5
0.8
0.7
80.4
24.9
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
50.5
0.1
2.2
76.04
41.4

Associated Gene:

Gene:
ITSN1
Ensembl Gene ID:
ENSAPLG00000007137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021618
108771137 - 108845392
74256
ENSAPLT00000017876
108771137 - 108865481
94345
ENSAPLT00000007524
108771137 - 108865481
94345
ENSAPLT00000028980
108771137 - 108845579
74443
ENSAPLT00000026636
108787971 - 108865481
77511