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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108841161_108844880_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108841161 - 108844880
Intron Length:
3720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAGAA
U12 Branch Point Sequence:
TCTTCCTTTATC
Flanking Amino Acid:
ELPKSTALPSVCQVIGMYDY
Intron Amino Acid Position:
1148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
62.2
0.3
1
59
38
Major PPT
85.7
0.8
0.8
77.2
36.8
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
72.3
0.68
1.6
78.41
37.7

Associated Gene:

Gene:
ITSN1
Ensembl Gene ID:
ENSAPLG00000007137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021618
108771137 - 108845392
74256
ENSAPLT00000017876
108771137 - 108865481
94345
ENSAPLT00000007524
108771137 - 108865481
94345
ENSAPLT00000028980
108771137 - 108845579
74443
ENSAPLT00000026636
108787971 - 108865481
77511