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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108855369_108856309_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108855369 - 108856309
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTGAATCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATTTTCTGAATC
Flanking Amino Acid:
YVNDLQLVTEIFQKPLMESE
Intron Amino Acid Position:
1253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.5
40.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.6
0.44
0.9
62.3
38.6
Minor 5ss
32.9
-2
2.9
40.4
45.3
Minor BPS
70.7
0.63
1.3
77.35
31.9

Associated Gene:

Gene:
ITSN1
Ensembl Gene ID:
ENSAPLG00000007137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026636
108787971 - 108865481
77511
ENSAPLT00000017876
108771137 - 108865481
94345
ENSAPLT00000007524
108771137 - 108865481
94345