About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108859449_108860545_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108859449 - 108860545
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAAC
5'SS Class:
strong_major
3'SS Sequence:
CTACTTTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TCTTCTTCTACT
Flanking Amino Acid:
AHVQCEGLSEQLVFNSVTNC
Intron Amino Acid Position:
1439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
74.7
35.6
Major BPS
75.1
0.62
1
65.6
41
Major PPT
80.4
0.68
0.8
76
32.2
Minor 5ss
39
-1.2
3
51.2
45.7
Minor BPS
60.1
0.4
1.9
80.12
42

Associated Gene:

Gene:
ITSN1
Ensembl Gene ID:
ENSAPLG00000007137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026636
108787971 - 108865481
77511
ENSAPLT00000017876
108771137 - 108865481
94345
ENSAPLT00000007524
108771137 - 108865481
94345