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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108876427_108876546_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
108876427 - 108876546
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TTCTTCCATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
ACCCTTTTGACA
Flanking Amino Acid:
KMSPITVNLMNLLAENGRLR
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
76.8
33.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
81.5
0.71
0.8
74.1
35.7
Minor 5ss
33.2
-1.9
2.8
38.8
40.3
Minor BPS
53.8
0.11
1.2
56.77
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007097
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007375
108874312 - 108877325
3014