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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108877085_108877160_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108877085 - 108877160
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCGCCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
TGCCCCTGAGCC
Flanking Amino Acid:
AARPVSKLVKPPVQVYGLEG
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
65.4
0.35
0.9
62.4
34.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
50.7
0
1.7
62.01
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007097
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007375
108874312 - 108877325
3014