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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108919667_108920829_R

Intron Information:

Intron Rank:
134427
Intron Class:
major
Intron Phase:
Intron Coordinates:
108919667 - 108920829
Intron Length:
1163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TATGTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.9
0.76
0.8
78.2
35.3
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
58.9
0.36
1.7
76.08
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019593
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026315
108919217 - 108921314
2098