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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108968448_108971697_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
108968448 - 108971697
Intron Length:
3250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
TTTCTTTTCAAG
Flanking Amino Acid:
PASHTFVSCKPETAAVLKRT
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
70.2
37.7
Major BPS
67.6
0.44
1.2
75
40
Major PPT
83.5
0.75
0.9
83.1
32.3
Minor 5ss
31.7
-2.1
3
37.9
46.9
Minor BPS
48.7
-0.2
1.9
61.29
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028293
108967970 - 108983542
15573