Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_108971838_108983361_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

108971838 - 108983361

Intron Length:

11524

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTATGCACG

5'SS Class:

major

3'SS Sequence:

TTTCTCATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTTTGTTTTATT

Flanking Amino Acid:

SKHKQRHRRGGYFLVDLEAP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.1

58.9

45.7

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

0.83

0.7

81.8

28.4

Minor 5ss

45.3

-0.5

2.5

46.1

Minor BPS

59.2

0.37

83.31

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025146

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036208

108967804 - 108983542

15739

ENSAPLT00000028293

108967970 - 108983542

15573