About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109209452_109210416_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109209452 - 109210416
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATG
Flanking Amino Acid:
GKEIKLYFAQTLHIGSSHLA
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
100
1.12
0.4
100
0
Minor 5ss
37.4
-1.4
3.3
52.4
44.8
Minor BPS
78
0.74
1.1
78.3
32.8

Associated Gene:

Gene:
RCAN1
Ensembl Gene ID:
ENSAPLG00000007074
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043576
109205984 - 109243256
37273
ENSAPLT00000017700
109206054 - 109243256
37203
ENSAPLT00000007349
109205984 - 109212936
6953