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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109210591_109212744_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
109210591 - 109212744
Intron Length:
2154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
CCTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
GCTGTGTTGACT
Flanking Amino Acid:
SDVFNQAETRAKFESLFRTY
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
71.4
41.2
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
89.7
0.89
0.6
87.8
22.3
Minor 5ss
69
0.64
2.2
73.3
43.5
Minor BPS
48.1
-0
2.2
66.69
44.6

Associated Gene:

Gene:
RCAN1
Ensembl Gene ID:
ENSAPLG00000007074
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007349
109205984 - 109212936
6953