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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109210591_109224090_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109210591 - 109224090
Intron Length:
13500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTTGTAGC
5'SS Class:
major
3'SS Sequence:
CCTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
GCTGTGTTGACT
Flanking Amino Acid:
KETPATPDYMAKFESLFRTY
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
62.7
41.6
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
89.7
0.89
0.6
87.8
22.3
Minor 5ss
38.7
-1.3
2.4
43.7
37.8
Minor BPS
48.1
-0
2.2
66.69
44.6

Associated Gene:

Gene:
RCAN1
Ensembl Gene ID:
ENSAPLG00000007074
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017700
109206054 - 109243256
37203