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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109224205_109243043_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109224205 - 109243043
Intron Length:
18839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
TCCTGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTGCTAATGACT
Flanking Amino Acid:
PRVFQEGPCRVRASFVNFLV
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
63.4
36.9
Major BPS
84.6
0.86
1
74
41.2
Major PPT
81.1
0.7
0.8
72.3
37.8
Minor 5ss
24.6
-2.9
3.3
24.9
37
Minor BPS
47.7
-0.1
1.9
70.57
40.1

Associated Gene:

Gene:
RCAN1
Ensembl Gene ID:
ENSAPLG00000007074
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017700
109206054 - 109243256
37203