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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109253718_109274838_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
109253718 - 109274838
Intron Length:
21121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCGC
5'SS Class:
major
3'SS Sequence:
TTTGTAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTTTGTAATT
Flanking Amino Acid:
QEHDISLFVKAGSDGESIGN
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
60.9
40.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
77
0.61
0.9
71.5
38.4
Minor 5ss
29.7
-2.3
3.5
41.4
45.3
Minor BPS
65
0.55
2
86.64
33.8

Associated Gene:

Gene:
CLIC6
Ensembl Gene ID:
ENSAPLG00000021137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035550
109252416 - 109279747
27332