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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109274949_109275377_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
109274949 - 109275377
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
CTGCAATTAACC
Flanking Amino Acid:
IFNVTTVDLKRKPADLQNLA
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
27.7
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
69.8
0.45
0.8
63.7
32.7
Minor 5ss
32.8
-2
3
39.5
45.9
Minor BPS
50.4
-0
1.8
62.23
42.6

Associated Gene:

Gene:
CLIC6
Ensembl Gene ID:
ENSAPLG00000021137
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035550
109252416 - 109279747
27332