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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109287016_109288924_R

Intron Information:

Intron Rank:
143631
Intron Class:
major
Intron Phase:
Intron Coordinates:
109287016 - 109288924
Intron Length:
1909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CAGCTTCTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78.1
36.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
81.3
0.7
0.9
77.9
35.2
Minor 5ss
44
-0.7
2.9
60.8
43.8
Minor BPS
48.7
-0
1.7
62.55
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024607
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034761
109286404 - 109290311
3908