About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109480127_109485695_F

Intron Information:

Intron Rank:
150181
Intron Class:
major
Intron Phase:
Intron Coordinates:
109480127 - 109485695
Intron Length:
5569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
69.9
0.45
1
61.9
43.3
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
68.6
0.66
1.5
83.3
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030714
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028421
109478929 - 109486899
7971
ENSAPLT00000018117
109479840 - 109487211
7372