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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109485756_109486221_F

Intron Information:

Intron Rank:
150182
Intron Class:
major
Intron Phase:
Intron Coordinates:
109485756 - 109486221
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
CTTTATTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ACTTCTGTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
79.4
0.73
1
80.1
32
Major PPT
82.7
0.73
0.8
80.9
30.8
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
57.5
0.23
2
68.85
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030714
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018117
109479840 - 109487211
7372