About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109486349_109486729_F

Intron Information:

Intron Rank:
150183
Intron Class:
major
Intron Phase:
Intron Coordinates:
109486349 - 109486729
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTCCTTCCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.7
86.9
30.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
76.8
0.6
0.8
70.6
34.8
Minor 5ss
32.5
-2
3.9
50.4
46
Minor BPS
53.7
0.1
2
72.01
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030714
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018117
109479840 - 109487211
7372