About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109544604_109553705_F

Intron Information:

Intron Rank:
134618
Intron Class:
major
Intron Phase:
Intron Coordinates:
109544604 - 109553705
Intron Length:
9102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
GTGTTCCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
74
0.54
0.9
67.9
32.2
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
48.9
-0
1.9
68.77
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022364
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046964
109543816 - 109554766
10951