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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109547270_109551998_F

Intron Information:

Intron Rank:
134617
Intron Class:
major
Intron Phase:
Intron Coordinates:
109547270 - 109551998
Intron Length:
4729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CATTCTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
ATGTCATTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
73.1
0.52
1
68.7
37
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
54.2
0.21
2
75.36
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022364
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036135
109547109 - 109553065
5957