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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109607360_109617174_F

Intron Information:

Intron Rank:
125134
Intron Class:
major
Intron Phase:
Intron Coordinates:
109607360 - 109617174
Intron Length:
9815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCACTTTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
TATACCTCACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77.9
36.9
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
76.5
0.6
0.8
69
36.8
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
49.4
0.03
2
72.07
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017393
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026939
109606597 - 109617477
10881