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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_109658067_109663451_R

Intron Information:

Intron Rank:
151200
Intron Class:
major
Intron Phase:
Intron Coordinates:
109658067 - 109663451
Intron Length:
5385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.9
29.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86.6
0.82
0.7
85.5
29.2
Minor 5ss
35.5
-1.6
3
44.2
37.3
Minor BPS
53.2
-0
1.7
64.52
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028872
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043436
109657125 - 109663506
6382